Finding the unloaded geometry#
from fenics_plotly import plot
import pulse
geometry = pulse.HeartGeometry.from_file(pulse.mesh_paths["simple_ellipsoid"])
# geometry = pulse.geometries.prolate_ellipsoid_geometry(mesh_size_factor=3.0)
material = pulse.NeoHookean()
# material = pulse.Guccione()
2023-09-24 20:17:17,405 [500] INFO pulse.geometry_utils:
Load mesh from h5
# Parameter for the cardiac boundary conditions
bcs_parameters = pulse.MechanicsProblem.default_bcs_parameters()
bcs_parameters["base_spring"] = 1.0
bcs_parameters["base_bc"] = "fix_x"
# Create the problem
problem = pulse.MechanicsProblem(geometry, material, bcs_parameters=bcs_parameters)
# Suppose geometry is loaded with a pressure of 1 kPa
# and create the unloader
unloader = pulse.FixedPointUnloader(problem=problem, pressure=3.0)
2023-09-24 20:17:17,601 [500] INFO pulse.unloader:
-------------------------- Unloading options ---------------------------
Target pressure: 3.0
maxiter = 10
tolerance = 0.0001
regenerate_fibers (serial only)= False
------------------------------------------------------------------------
# Unload the geometry
unloader.unload()
2023-09-24 20:17:17,608 [500] INFO pulse.unloader: ------------------------------------------------------------------------
2023-09-24 20:17:17,610 [500] INFO pulse.unloader: ----------------------------Start unloading-----------------------------
2023-09-24 20:17:17,611 [500] INFO pulse.unloader: ------------------------------------------------------------------------
2023-09-24 20:17:17,649 [500] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:17:17,650 [500] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:17:17,652 [500] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:17:17,653 [500] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:17:17,875 [500] DEBUG UFL_LEGACY: Blocks of each mode:
1 full
2023-09-24 20:17:18,412 [500] INFO pulse.unloader:
LV Volume of original geometry = 0.749 ml
2023-09-24 20:17:18,452 [500] INFO pulse.unloader:
Do an intial solve
2023-09-24 20:17:18,563 [500] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:17:18,564 [500] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:17:18,565 [500] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:17:18,566 [500] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:17:18,566 [500] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:17:19,234 [500] DEBUG UFL_LEGACY: Blocks of each mode:
99 full
2023-09-24 20:17:19,336 [500] DEBUG UFL_LEGACY: Blocks of each mode:
2023-09-24 20:17:19,625 [500] DEBUG UFL_LEGACY: Blocks of each mode:
18 full
2023-09-24 20:18:10,026 [500] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:18:10,027 [500] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:18:10,028 [500] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:18:10,028 [500] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:18:10,029 [500] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:18:10,278 [500] DEBUG UFL_LEGACY: Blocks of each mode:
10 full
2023-09-24 20:18:10,381 [500] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2023-09-24 20:18:10,644 [500] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2023-09-24 20:18:15,101 [500] INFO pulse.unloader:
Iteration: 0
2023-09-24 20:18:15,347 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/quadrature/quadraturerepresentation.py:58: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2023-09-24 20:18:15,401 [500] WARNING FFC: Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2023-09-24 20:18:15,881 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:18:15,887 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/quadrature/quadraturerepresentation.py:58: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2023-09-24 20:18:15,943 [500] WARNING FFC: Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2023-09-24 20:18:16,471 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:18:16,532 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:18:16,534 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:18:16,594 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:18:16,595 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:18:16,649 [500] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.568 ml
2023-09-24 20:18:16,868 [500] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:18:16,869 [500] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:18:16,870 [500] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:18:16,870 [500] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:18:16,871 [500] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:18:17,255 [500] DEBUG UFL_LEGACY: Blocks of each mode:
99 full
2023-09-24 20:18:17,356 [500] DEBUG UFL_LEGACY: Blocks of each mode:
2023-09-24 20:18:17,637 [500] DEBUG UFL_LEGACY: Blocks of each mode:
18 full
2023-09-24 20:19:08,073 [500] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:19:08,074 [500] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:19:08,075 [500] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:19:08,076 [500] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:19:08,077 [500] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:19:08,260 [500] DEBUG UFL_LEGACY: Blocks of each mode:
10 full
2023-09-24 20:19:08,361 [500] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2023-09-24 20:19:08,624 [500] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2023-09-24 20:19:13,058 [500] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.568 ml
2023-09-24 20:19:13,289 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:13,291 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:13,351 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:13,352 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:13,412 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:13,414 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:13,468 [500] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.717 ml
2023-09-24 20:19:13,484 [500] INFO pulse.unloader:
Residual: 0.011328623428538194
2023-09-24 20:19:13,485 [500] INFO pulse.unloader:
Iteration: 1
2023-09-24 20:19:13,717 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:13,718 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:13,776 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:13,778 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:13,835 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:13,837 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:13,889 [500] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.596 ml
2023-09-24 20:19:17,706 [500] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.596 ml
2023-09-24 20:19:17,938 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:17,940 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:18,002 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:18,005 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:18,065 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:18,068 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:18,124 [500] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.754 ml
2023-09-24 20:19:18,140 [500] INFO pulse.unloader:
Residual: 0.001698010214540216
2023-09-24 20:19:18,141 [500] INFO pulse.unloader:
Iteration: 2
2023-09-24 20:19:18,374 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:18,377 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:18,435 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:18,437 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:18,494 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:18,496 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:18,549 [500] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.592 ml
2023-09-24 20:19:22,362 [500] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.592 ml
2023-09-24 20:19:22,595 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:22,597 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:22,657 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:22,659 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:22,718 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:22,720 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:22,774 [500] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.749 ml
2023-09-24 20:19:22,790 [500] INFO pulse.unloader:
Residual: 0.00025928769312986966
2023-09-24 20:19:22,791 [500] INFO pulse.unloader:
Iteration: 3
2023-09-24 20:19:23,023 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:23,025 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:23,083 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:23,085 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:23,144 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:23,145 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:23,198 [500] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.593 ml
2023-09-24 20:19:27,056 [500] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.593 ml
2023-09-24 20:19:27,288 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:27,290 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:27,350 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:27,351 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:27,410 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:27,412 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:27,467 [500] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.750 ml
2023-09-24 20:19:27,482 [500] INFO pulse.unloader:
Residual: 3.93130429591956e-05
2023-09-24 20:19:27,483 [500] INFO pulse.unloader: ########################################################################
Unloading suceeding
# Get the unloaded geometry
unloaded_geometry = unloader.unloaded_geometry
2023-09-24 20:19:27,722 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:27,724 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:27,782 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:27,784 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:27,843 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:19:27,845 [500] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
fig = plot(geometry.mesh, opacity=0.0, show=False)
fig.add_plot(plot(unloaded_geometry.mesh, color="red", show=False))
fig.show()